# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ggDNAvis" in publications use:'
type: software
license: MIT
title: 'ggDNAvis: ''ggplot2''-Based Tools for Visualising DNA Sequences and Modifications'
version: 1.0.0.9001
doi: 10.64898/2026.03.02.708895
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ggDNAvis
- type: url
  value: https://doi.org/10.64898/2026.03.02.708895
abstract: Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across
  multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or
  (c) base modifications such as DNA methylation called by modified bases models in
  Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions,
  and functions starting with extract_and_sort_<>() are key helper functions for reading
  files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>,
  a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>,
  and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
authors:
- family-names: Jade
  given-names: Evelyn
  email: evelynjade42@gmail.com
  orcid: https://orcid.org/0009-0003-7761-5425
preferred-citation:
  type: article
  title: 'ggDNAvis: a ggplot2-based R package for creating high-quality DNA sequence
    and modification visualisations'
  authors:
  - family-names: Jade
    given-names: Evelyn
    email: evelynjade42@gmail.com
    orcid: https://orcid.org/0009-0003-7761-5425
  - family-names: Scotter
    given-names: Emma L.
    orcid: https://orcid.org/0000-0003-4064-3599
  journal: bioRxiv
  year: '2026'
  doi: 10.64898/2026.03.02.708895
  url: https://doi.org/10.64898/2026.03.02.708895
repository: https://ejade42.r-universe.dev
repository-code: https://github.com/ejade42/ggDNAvis
commit: 07a8671f48c1248589c5878e28564d2aa17b5a68
url: https://ejade42.github.io/ggDNAvis/
date-released: '2026-06-03'
contact:
- family-names: Jade
  given-names: Evelyn
  email: evelynjade42@gmail.com
  orcid: https://orcid.org/0009-0003-7761-5425