Package: ggDNAvis
Title: 'ggplot2'-Based Tools for Visualising DNA Sequences and
        Modifications
Version: 1.0.1.9002
Authors@R: 
    person(
        "Evelyn", "Jade", 
        email = "evelynjade42@gmail.com", 
        role = c("aut", "cre", "cph"),
        comment = c(ORCID = "0009-0003-7761-5425")
    )
Description: Uses 'ggplot2' to visualise either (a) a single DNA/RNA
        sequence split across multiple lines, (b) multiple DNA/RNA
        sequences, each occupying a whole line, or (c) base
        modifications such as DNA methylation called by modified bases
        models in Dorado or Guppy. Functions starting with
        visualise_<>() are the main plotting functions, and functions
        starting with extract_and_sort_<>() are key helper functions
        for reading files and reformatting data. Source code is
        available at <https://github.com/ejade42/ggDNAvis>, a full
        non-expert user guide is available at
        <https://ejade42.github.io/ggDNAvis/>, and an interactive
        web-app version of the software is available at
        <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
Imports: cli, dplyr, ggnewscale, ggplot2 (>= 4.0.0), grid, png, ragg,
        rlang, stats, stringr, tidyr, utils
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: bslib, colourpicker, jsonlite, knitr, magick, markdown,
        rmarkdown, shiny, shinyjs, testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: R (>= 3.5)
LazyData: true
Language: en-GB
URL: https://ejade42.github.io/ggDNAvis/,
        https://github.com/ejade42/ggDNAvis,
        https://doi.org/10.64898/2026.03.02.708895
BugReports: https://github.com/ejade42/ggDNAvis/issues
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        libharfbuzz-dev libicu-dev libjpeg-dev libpng-dev libtiff-dev
        libwebp-dev
Repository: https://ejade42.r-universe.dev
Date/Publication: 2026-06-23 03:54:39 UTC
RemoteUrl: https://github.com/ejade42/ggdnavis
RemoteRef: HEAD
RemoteSha: 48565d864d6cbee5e0098771e24bef49c66786ec
NeedsCompilation: no
Packaged: 2026-06-23 06:49:19 UTC; root
Author: Evelyn Jade [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0003-7761-5425>)
Maintainer: Evelyn Jade <evelynjade42@gmail.com>